oesteban

mriqc

The package provides a series of image processing workflows to extract and compute a series of NR (no-reference), IQMs (image quality metrics) to be used in QAPs (quality assessment protocols) for MRI (magnetic resonance imaging).

talks

My public talks

fmriprep

academicdb

Project to maintain a database for CV/website rendering

bibbias

Analyze a bib file for biases

bids-examples

A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.

bids-specification

Brain Imaging Data Structure (BIDS) Specification

bids-validator

Validator for the Brain Imaging Data Structure

bidsphysio

Converts physio data to BIDS physiological recording

diagnostics-test1

eddymotion

Open-source eddy-current and head-motion correction for dMRI.

git-changelog

Automatic Changelog generator using Jinja2 templates.

HCPh-fMRI-tasks

This repository contains a Psychopy3 experiment describing the quality control fMRI task of the Human Connectome Phantom (HCPh) project. The task contains a visual trial block, an eye-movement trial block, and a finger-tapping trial block.

hcph-sops

SOPs of the HCPh project

heudiconv

A flexible DICOM converter for organizing brain imaging data into structured directory layouts

nifreeze

An open-source framework for volume-to-volume motion estimation in d/fMRI and PET, and Eddy-current-derived distortion estimation in dMRI

nireports

The NiPreps' Reporting and Visualization system - report templates and "reportlets"

nitransforms

a standalone fork of nipy/nibabel#656

phys2bids

Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!

phys2cvr

python module to compute cerebrovascular reactivity mapping and other related maps

psychopy

For running psychology and neuroscience experiments

psychopy-eyetracker-eyelink

Extension for PsychoPy which adds support for SR Research eyetrackers

pybids

Python package to access BIDS datasets (yet to get going)

pyedfread

A library to parse SR research EDF files into python.

rapidtide

rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data

regression-test-paper

scikit-learn

scikit-learn: machine learning in Python

sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

tpl-onavg

some default

tpl-SUIT

some default