obophenotype

obophenotype

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obophenotype's repositories

human-phenotype-ontology

Ontology for the description of human clinical features

Language:MakefileLicense:NOASSERTIONStargazers:284Issues:26Issues:10327

cell-ontology

An ontology of cell types

Language:MakefileLicense:CC-BY-4.0Stargazers:137Issues:26Issues:1482

uberon

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

Language:Emacs LispLicense:NOASSERTIONStargazers:129Issues:29Issues:2397

upheno

The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

Language:MakefileLicense:CC0-1.0Stargazers:75Issues:30Issues:584

bio-attribute-ontology

source files for OBA (Ontology of Biological Attributes)

Language:Jupyter NotebookLicense:CC0-1.0Stargazers:26Issues:7Issues:163

ncbitaxon

Build for NCBITaxon

Language:PythonLicense:BSD-3-ClauseStargazers:25Issues:13Issues:55

biological-spatial-ontology

An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces

Language:MakefileLicense:NOASSERTIONStargazers:12Issues:18Issues:23

provisional_cell_ontology

Draft cell type definitions from data - candidates for inclusion in CL

Language:MakefileLicense:CC-BY-4.0Stargazers:11Issues:10Issues:33

brain_data_standards_ontologies

A repository for co-ordinating work on ontologies for the Brain Data Standards Project

Language:PythonLicense:Apache-2.0Stargazers:10Issues:8Issues:195

c-elegans-phenotype-ontology

Ontology for phenotypes pertaining to the nematode Caenorhabditis elegans and related nematodes used by the nematode genome database WormBase

Language:MakefileLicense:CC-BY-4.0Stargazers:10Issues:8Issues:22

developmental-stage-ontologies

Source files for various species-specific stage ontologies

zebrafish-phenotype-ontology

A vocabulary for describing Zebrafish Phenotypes

xenopus-phenotype-ontology

XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and X. tropicalis.

c-elegans-gross-anatomy-ontology

C. elegans Gross Anatomy Ontology

Language:MakefileLicense:CC-BY-4.0Stargazers:7Issues:8Issues:19

dicty-phenotype-ontology

Dicty Phenotype Ontology

Language:MakefileLicense:CC0-1.0Stargazers:6Issues:7Issues:6

human-developmental-anatomy-ontology

Ontology of human developmental anatomy

mouse-anatomy-ontology

Ontologies for mouse anatomy and development

Language:MakefileLicense:NOASSERTIONStargazers:5Issues:12Issues:123

upheno-dev

Framework for the automated construction of uPheno 2.0

Language:JavaLicense:MITStargazers:5Issues:11Issues:43

c-elegans-development-ontology

C. elegans Development Ontology

Language:MakefileLicense:CC-BY-4.0Stargazers:4Issues:7Issues:3

caro

Working repository for v2 of CARO

Language:MakefileLicense:CC-BY-4.0Stargazers:3Issues:16Issues:30

spider-ontology

An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing), and products (e.g. silk, web, burrow).

cephalopod-ontology

An ontology of cephalopod anatomy and traits

chebi_obo_slim

A slimmed down version of CHEBI sufficient to cover 99% of the term needs across OBO ontologies

hpo-translations

This repo will contain the Human Phenotype Ontology language profiles

Language:PythonLicense:MITStargazers:1Issues:0Issues:0
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pro_obo_slim

A repo to generate a pro slim for the OBO phenotype organisation

Language:MakefileStargazers:0Issues:13Issues:1

ABA_Uberon

Ontologized versions of the ABA structureGraphs - with mappings to Uberon

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