obophenotype's repositories
fungal-anatomy-ontology
A structured controlled vocabulary for the anatomy of fungi
cell-ontology-training
Training session for the Cell Ontology
planarian-phenotype-ontology
Planarian Phenotype Ontology
porifera-ontology
An ontology covering the anatomy of Porifera (sponges)
planaria-ontology
PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea.
ctenophore-ontology
An ontology of ctenophores (comb jellies)
zebrafish-phenotype-ontology-build
:fish: Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)
asctb-tables
LinkML schema for ASCB-T tables
bds-pipeline-config
Brain data standards ontologies building pipeline configuration
brain_data_standards_queries
A repository for the Brain Data Standards Ontology cypher queries.
insect_neuroanatomy_ontology
Site for the development of an insect neuroanatomy ontology, starting from the Brain Name Standard.
obophenotype.github.io
Content for obophenotype ontologies
ontology-kg-preprocessing-kit
Simple preprocessing kit for beating a set of ontologies into shape for KG ingestion
pheno_pattern_workbench
Workbench for Analysing and Alignment Support of Phenotype Ontology Patterns
allen-neuron-types
Building an ontology of specialised neuron types from data - well supported terms may later migrate to CL.
covid-kg-ontology-preprocessing
Configuration for the preprocessing of ontology dependencies for the ingestion into a knowledge graph.
covid19cellatlas_semantic_map
A mapping of cell annotations in datasets on https://www.covid19cellatlas.org/ to CL using matrix_semantic_map
expression_patterns
A repository of design patterns for semantic models of gene expression
ontotools-docker-config
Configuration to deploy ontotools using docker compose
phenotypepatternanalysis
This repository contains the ongoing work of extracting and documenting phenotype related patterns across relevant phenotype ontologies
uberon-phenoscape-ext
Phenoscape extensions to Uberon