Nicolas Vannieuwkerke's repositories
nf-test-snippets
A collection of snippets to use for nf-test assertions
bioconda-recipes
Conda recipes for the bioconda channel.
configs
Config files used to define parameters specific to compute environments at different Institutions
multi-package-containers
Testing building mulled containers for multi-requirement tools.
svync
A tool to standardize VCF files from structural variant callers
nextflow
A DSL for data-driven computational pipelines
nextflow-demo
A demonstration on how to easily run a Nextflow pipeline and how easy it is to create one
nf-cmgg-configs
Nextflow config files
nf-cmgg-preprocessing
Preprocessing workflow for sequencing data at CMGG
nf-cmgg-structural
Nextflow workflow for calling structural variants
nf-co.re
Code and files for the main nf-core website.
nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nf-dynamic-containers
A script to dynamically fetch conda/containers from bioconda/biocontainers for nextflow pipelines
nf-test-plugins
Repository for nf-test plugins
nf-validation
Params validation plugin for Nextflow pipelines
nf-validation-demo
A repository for demonstrating nf-validation
pipeception
A small POC pipeline testing out how to run pipelines inside of another pipeline
plugins
Nextflow plugins index repository
python-scripts
A repository containing a collection of some useful small Python scripts I wrote
seqr
web-based analysis tool for rare disease genomics
test-datasets
Test data to be used for automated testing with the nf-core pipelines
testpipeline
A small example pipeline used to test new nf-core infrastructure and common code.
tools
Python package with helper tools for the nf-core community.
variantbenchmarking
A nextflow variant benchmarking pipeline - premature
website
Nextflow public web site
WisecondorX
WisecondorX — An evolved WISECONDOR