Nicolas Vannieuwkerke's repositories
nf-test-snippets
A collection of snippets to use for nf-test assertions
cookiecutter-nftest-plugin
A cookiecutter template for an nf-test plugin
multi-package-containers
Testing building mulled containers for multi-requirement tools.
bioconda-recipes
Conda recipes for the bioconda channel.
configs
Config files used to define parameters specific to compute environments at different Institutions
bytesize-nft-bam
Repository that contains all the content used for the nft-bam bytesize of July 30th 2024
nextflow
A DSL for data-driven computational pipelines
nextflow-demo
A demonstration on how to easily run a Nextflow pipeline and how easy it is to create one
nextflow-watchpath-samplesheet
A POC implementation of the `.watchPath` Nextflow channel factory in combination with a samplesheet
nextflow_schema
A repository to host meta JSON schemas for Nextflow
nf-cmgg-structural
Nextflow workflow for calling structural variants
nf-co.re
Code and files for the main nf-core website.
nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nf-ga4gh
GA4GH plugin for Nextflow
nf-test
Simple test framework for Nextflow pipelines
nf-test-plugins
Repository for nf-test plugins
nf-validation
Params validation plugin for Nextflow pipelines
nf-validation-demo
A repository for demonstrating nf-validation
nft-utils
nf-test utility functions
pipeception
A small POC pipeline testing out how to run pipelines inside of another pipeline
plugins
Nextflow plugins index repository
python-scripts
A repository containing a collection of some useful small Python scripts I wrote
testpipeline
A small example pipeline used to test new nf-core infrastructure and common code.
tools
Python package with helper tools for the nf-core community.
variantbenchmarking
A nextflow variant benchmarking pipeline - premature
vibbits-nextflow-workshop
Nextflow workshop materials March 2023
website
Nextflow public web site