npp97's repositories
eco-centennial-paper
Manuscript for Ecology centennial paper
ED2-1
Ecosystem Demography Model
emcee
The Python ensemble sampling toolkit for affine-invariant MCMC
FitFarquharModel
Fitting routine for the Farquhar model parameters to a series of measured A-Ci curve data
GDAY
G'DAY simulates carbon, nitrogen & water dynamics on a daily time step.
IBM-ecology-simulator
Individual Base Model simulator. C library that allow to run eficient IBM simulations with Monte Carlo algorithms
IMB-SizeDependent
Library to simulate IBM with size dependent growth rate and asymetric competition.
KineticEval
An R package for kinetic evaluations
landsat_preprocess
IPython notebook documenting a workflow for preprocessing Landsat data
Liu_reanalysis
Analysis of Liu et al paper in Global Ecology and Biogeography
met2cf.NARR
Download, format, subset
MixSIAR
A graphical user interface (GUI) for MixSIAR, a Bayesian stable isotope mixing model
model_isotope
Supplementary material for the paper: Stable oxygen isotope signatures of early season wood in Agathis Australis (*Kauri*) tree-ring earlywood: Preliminary results and prospects for palaeoclimate reconstructions. Lorrey at al. 2014, submitted to JGR: Biogeosciences
ParamDB
Database and Python API for managing ecohydrology parameters used by RHESSys
PAWL
Implementation of the PAWL algorithm
PestED
exploratory code to add pest/pathogen scheme to ED-like ecophysiology
pestpp
PEST++ inverse model project
pNUK73
A Metropolis-Hastings MCMC implementation that fits a simple Monod model to a bacterial growth curve
pymc
PyMC version 3 (PyMC 2 is in branch 2.3)
R
R script for LPJ model
Rest_sp_mod
Spatial modelling of restoration priorities in tropical forests
RHESSys
The Regional Hydro-Ecologic Simulation System
rwtocore
Rwtocore: convert tree-ring measurements to drawings of cores
TRADER
Tree Ring Analysis of Disturbance Events in R
tree-ring-toolbox
A collection of Matlab functions to do various tasks in tree-ring analysis, originally by Dave Meko for his Time Series Analysis course.
ULM
Unified Land Model