nordhuang's repositories
fastqPaper
I collect public fastq records in peer papers
Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
focusCancer
focus the papers of cancer
kubernetes
Production-Grade Container Scheduling and Management
smlDatas
statistical machine learning Data sets for exercising
echarts
A powerful, interactive charting and visualization library for browser
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
MutScan
Detect important mutations by scanning FastQ files directly
ISLR_labs
<<An Introduction to Statistical Learning with Applications in R>> lab codes
statistics-cases-with-R-in-papers
statistics cases with R in papers
ENAR2016
Introduction to High Throughput Data Analysis Using R / Bioconductor
latex-template-collection
A collection of different LaTeX templates (cv, invoices, timesheets, letters, etc.).
ctdna_papers
papers collections of cancer detected from plasma
pileup2base
Parse samtools pileup file to get how many bases and what kind of bases are called
cnvkit
Copy number variant detection from targeted DNA sequencing
delly
DELLY: Structural variant discovery by integrated paired-end and split-read analysis
bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
htslib
C library for high-throughput sequencing data formats