nordhuang / samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

samtools

This is the official development repository for samtools.

The original samtools package has been split into three separate but tightly coordinated projects:

• htslib: C-library for handling high-throughput sequencing data
• samtools: mpileup and other tools for handling SAM, BAM, CRAM
• bcftools: calling and other tools for handling VCF, BCF

See also http://github.com/samtools/