Noorsher Ahmed's starred repositories
pytorch-CycleGAN-and-pix2pix
Image-to-Image Translation in PyTorch
PyTorch-StudioGAN
StudioGAN is a Pytorch library providing implementations of representative Generative Adversarial Networks (GANs) for conditional/unconditional image generation.
le-git-graph
Browser extension to add git graph to GitHub website.
machine-learning-book
Code Repository for Machine Learning with PyTorch and Scikit-Learn
pytorch-unet
Simple PyTorch implementations of U-Net/FullyConvNet (FCN) for image segmentation
pytorch-msssim
PyTorch differentiable Multi-Scale Structural Similarity (MS-SSIM) loss
InstrumentKit
Python package for interacting with laboratory equipment over various buses.
spateo-release
Spatiotemporal modeling of spatial transcriptomics
Connected_components_PyTorch
A PyTorch implementation of Connected Components Labeling
bento-tools
A Python toolkit for subcellular analysis of spatial transcriptomics data
jupyter-desktop-server
Run a Linux Desktop on a JupyterHub
ClusterMap
ClusterMap for multi-scale clustering analysis of spatial gene expression
stardist-napari
StarDist plugin for napari
FISHFactor
A probabilistic factor model for spatial transcriptomics data with subcellular resolution
BISB-Bootcamp-2020
FA2020 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
thorlabs-mtd415t
Simple Python wrapper for the Thorlabs MTD415T OEM temperature controller module
TensionMap
tension inference for epithelial cells
publications
Materials related to publications (datasets, code snippets, etc.)
seqfish-hack
seqFISH+ data in tidy format for a mini-hackathon
dna-seqfish-plus-multi-omics
Spatial multi-omics analysis code and additional resources