saezlab / liana-py

LIANA+: an all-in-one framework for cell-cell communication

http://liana-py.readthedocs.io/

saezlab/liana-py Issues

Please check if appropriate organism/ID type was provided! Allowed proportion (0.98) of missing resource elements exceeded (1.00).
Updated a month ago6
Sanity check if liana uses the log normalised values
Updated a month ago1
Add a tutorial on GPU-accelerated misty
Updated a month ago
Clarify LIANA + MOFA vignette
Updated a month ago2
AnnData dtype argument deprecation
Updated a month ago
MOFA talk with multiple samples
Updated a month ago1
code li.pl.dotplot output an disappointing result
Closed 2 months ago5
Export Elbow plot from nmf
Updated 2 months ago
By default do not convert views to `csr_matrix` when building `MistyData`.
Closed 2 months ago1
External + GPU-enabled MISTy models
Closed 2 months ago
Generate Union of Causal Net Predictions
Closed 2 months ago
Add bumpversion + metadata
Closed 2 months ago
Split global from local scores
Closed 2 months ago
Add a check that for the subset of cell types in `li.multi.dea_to_lr`
Closed 2 months ago
ValueError: Please check if appropriate organism/ID type was provided!
Updated 2 months ago3
Frequency Chord diagram and Heatmap in Python
Updated 2 months ago7
ZeroDivisionError: float division by zero
Updated 2 months ago8
Liana on pseduo bulk-sc data data
Updated 2 months ago6
Flow chart to guide standard LIANA+ workflows
Updated 2 months ago
Getting an error in liana multi df_to_lr
Closed 2 months ago15
Error with li.mt.rank_aggregate.by_sample
Closed 2 months ago2
Metabolite-mediated CCC tutorial
Closed 3 months ago
Question regarding ranking and aggregating from all methods.
Closed 3 months ago5
Magnitude ranks identical in same sample across cell type
Closed 3 months ago2
Single-cell Multi-omics tutorial
Updated 3 months ago
Move Vignettes to Another Repo
Updated 3 months ago
move LIANA+ plots to matplotlib and seaborn? [User Opinons Welcome]
Updated 3 months ago5
Update MOFAcell Tutorial
Updated 4 months ago
Difference on dotplot when running Steady-state Ligand-Receptor inference vignette from the Rank Aggregate section
Closed 5 months ago3
Error in function documentation / vignette
Closed 5 months ago2
Should we exclude CellTalkDB from curated resources list?
Updated 5 months ago4
Trouble with liana: 'liana.resource' has no attribute 'explode_complexes'
Closed 5 months ago4
Implement GPU to speed up the CCC caculation in process of rank_aggregate method (CellChat part)?
Updated 5 months ago1
The mouse resource are missing important interactions that should be possible to convert
Updated 6 months ago2
Cellphone DB (and other database versions)
Updated 6 months ago2
ValueError: Observations annot. `var` must have as many rows as `X` has columns...
Closed 6 months ago3
Additional metadata in results dataframe
Updated 7 months ago2
AttributeError: module 'corneto.methods.carnival' has no attribute 'select_mip_solver'
Closed 7 months ago11
KeyError: missing elements
Closed 7 months ago4
Help understanding causal network output
Updated 7 months ago1
li.multi.df_to_lr function gave gene Value error
Closed 7 months ago4
What was steady_rank and why is it removed?
Closed 7 months ago1
AttributeError: module 'liana.method' has no attribute 'build_prior_network'
Closed 8 months ago4
Verbosity/Logging
Closed 8 months ago
Missing Resources
Closed 8 months ago3
Sort interactions names in `li.pl.tileplot` by the `orderby` argument
Closed 8 months ago2
Clean up MISTy's pipeline
Closed 8 months ago
Add aggregate function for MISTy models (extend plots)
Updated 8 months ago3
Clarification regarding hypothesis testing
Closed 9 months ago2
Bug report for a tileplot function.
Closed 10 months ago1