nkrumm

mixcurve

A library for 1:1 mixing study interpretations

ml4a-guides

practical guides, tutorials, and code samples for ml4a

taxadb

:hatching_chick: locally query the ncbi taxonomy --

CoNIFER

CoNIFER (Copy Number Inference From Exome Reads) can discover CNVs from exome read-depth data. See Krumm et al., 2012 (Genome Research) for more information.

MarViN

livebooth

A simple photobooth server and webapp. Watches an incoming folder and serves to web. Built with node + react.js.

medsearch

conifer-tools

CoNIFER Tools - Tools for improving call generation, annotation and filtering. Used in conjuction with CoNIFER (Copy Number Inference From Exome Reads)

asd-jre-public

Code + Pipelines for the NDAR ASD pipelines

docker-nginx

NGiNX HTTP server

nkrumm.github.io

Personal blog + website, made using jekyll and skeleton

s3proxy

S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.

gauss

GAUSS: Genome Annotation Umbrella for SNVs and Structure

frFAST

frFAST: (frankenFAST), a lightweight pipeline designed to calculate read-depth across an exome or genome using the mrsFAST mapper

StarCluster

StarCluster is an open source cluster-computing toolkit for Amazon's Elastic Compute Cloud (EC2).

rattlebus

the RATTLEBUS

NGS-pipeline

NGS pipeline based on the python module ruffus

pybloomfiltermmap

Fast Python Bloom Filter using Mmap