Nik Krumm's repositories

storagecosts

Estimate the cost of NGS cloud storage.

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azure-repos-vscode

Visual Studio Team Services Extension for VS Code

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dada2-nf

A Nextflow pipeline for processing 16S rRNA sequences using dada2

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demux-nf

A nextflow demux pipeline

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dokku

A docker-powered PaaS that helps you build and manage the lifecycle of applications

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dokku-nginx-logging

Plugin for dokku that copies a nginx.conf.sigil to each app on post-extract.

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dokku-odoo

A Odoo image ready to be deployed on dokku mini-PaaS

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genie_pipeline

GENIE = GErmline VarIEnt Pipeline

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GTCtoVCF

Script to convert GTC/BPM files to VCF

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hello

test nextflow script

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igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

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knowledgesystems-k8s-deployment

Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes

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logspout-s3

[NOT MAINTAINED] Logspout Adapter for AWS S3 to send docker logs to S3 - ready for Athena

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MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

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nextflow

A DSL for data-driven computational pipelines

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nextflow-s3fs

An S3 File System Provider for Java 7

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react-bootstrap-typeahead

React typeahead with Bootstrap styling

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react-use

React Hooks — 👍

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troposphere

troposphere - Python library to create AWS CloudFormation descriptions

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