nilesh-tawari

cheatsheets-ai

Essential Cheat Sheets for deep learning and machine learning researchers https://medium.com/@kailashahirwar/essential-cheat-sheets-for-machine-learning-and-deep-learning-researchers-efb6a8ebd2e5

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

luaforwindows

Lua for Windows is a 'batteries included environment' for the Lua scripting language on Windows. NOTICE: Looking for maintainer.

bioconda-recipes

Conda recipes for the bioconda channel.

hail

Cloud-native genomic dataframes and batch computing

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

patterns

A curated collection of Nextflow implementation patterns

awesome-cancer-variant-databases

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

scikit-allel

A Python package for exploring and analysing genetic variation data

pcgr

Personal Cancer Genome Reporter (PCGR)

eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

clinvar

This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

nextflow-demos

Example Nextflow pipelines and programming techniques

genmod

Annotate models of genetic inheritance patterns in variant files (vcf files)

varcmp

The first CHM1 paper (Li, 2014)

PSAP-pipeline

mybiocaddie

test for biocaddie-gym