nickdelgrosso

execnb

Execute a jupyter notebook, fast, without needing jupyter

open-webui

User-friendly WebUI for LLMs (Formerly Ollama WebUI)

instructor-training

Instructor Training

BioImageAnalysisNotebooks

Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

syncopy

Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data

gutenberg

harp-python

A low-level interface to data collected with the Harp binary protocol

protocol

Description of the Harp protocol.

acquisition-board

Hardware interface for streaming up to 512 channels of neural data via USB

python-processor

A plugin for running Python code inside the Open Ephys GUI

heat

Distributed tensors and Machine Learning framework with GPU and MPI acceleration in Python

learn-and-teach

RSE-related training resources

mne_course

Resources for an introductory course on signal processing in the MNE-Python package.

hdfview

DeepLabCut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

ximea_recording

code to control, stream, capture images from 10 ximea cameras

python-glob2

Version of the glob module that supports recursion via **, and can capture patterns.

beartype

Unbearably fast near-real-time hybrid runtime-static type-checking in pure Python.

sql_book

Code repository for the book SQL for Data Analysis

WIPAR

Fork to have full rights over repository

st_db_dash_demo

brainlit

Method container for computational neuroscience on brains.

Gymnasium

An API standard for single-agent reinforcement learning environments, with popular reference environments and related utilities (formerly Gym)

wily

A Python application for tracking, reporting on timing and complexity in Python code

pyzoom

Python wrapper for Zoom Video API with an OAUTH Wizard

dynamicviz

pypistats

Command-line interface to PyPI Stats API to get download stats for Python packages

bioinformatics-career-survey

Survey of bioinformatics field

tutorials

This is a tutorial repository for members of the AG Schwarz beginning to use pose estimation and python coding for running behavior experiments

DeepLabStream

Closed-loop behavioral experiment toolkit using pose estimation of body parts.