nh13

Nils Homer's starred repositories

website

Code and files for the main nf-core website.

Language:AstroMIT6300

stitch

Stitch is a toolkit for analysis of chimeric reads in sequencing data

Language:RustMIT900

plasmapR

Creating plasmid maps inside ggplot.

Language:RNOASSERTION7300

latch

a python bioinformatics framework

Language:PythonMIT15900

pgr-tk

PGR-TK: Pangenome Research Tool Kit

Language:RustMIT8800

gget

🧬 gget enables efficient querying of genomic reference databases

Language:PythonBSD-2-Clause87800

aegea

Amazon Web Services Operator Interface

Language:PythonApache-2.06800

stix

Structural Variant Index

Language:CMIT6600

fgpyo

Quality of life improvements for Bioinformatics in Python.

Language:PythonNOASSERTION2400

hmcnc

Hidden Markov Model based Copy number caller

Language:C++2000

extendr

R extension library for rust designed to be familiar to R users.

Language:RustMIT40900

GLIMPSE

Low Coverage Calling of Genotypes

Language:C++MIT12400

perbase

Per-base per-nucleotide depth analysis

Language:RustMIT10900

This repository is home to CALITAS, a CRISPR-Cas-aware ALigner for In silico off-TArget Search. CALITAS implements a customized gapped alignment of guide sequences to genomes and other reference sequences, returning consistent and non-redundant alignments.

Language:ScalaBSD-3-Clause-Clear800