nh13 / fqme

FASTQ ME

Please do not use this for any serious work until unit tests have been completed

Quickstart

Compress and index (two-ways) the FASTQ with bgzip:

cat test.fastq | fqme index --output test.fastq.gz.fqi -n 100 | bgzip -c -i --index-name test.fastq.gz.gzi > test.fastq.gz

Extract entries:

fqme extract --input test.fastq.gz -s 100 -e 102

Help

fqme --help

To Build

cargo build --release

The executable is located in:

target/release/fqme

To Test

cargo test