nh13

snakemake-pytest

Snakemake with pytest example

bfx-qc-reporter

Bioinformatics QC Reporting Tools

bioinformatic-worfklow-idioms

Common idioms and their implementation across Bioinformatic workflow languages

airflow

Apache Airflow - A platform to programmatically author, schedule, and monitor workflows

badges

:pencil: Markdown code for lots of small badges :ribbon: :pushpin: (shields.io, forthebadge.com etc) :sunglasses:. Contributions are welcome! Please add yourse!

enasearch

A Python library for interacting with ENA's API

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

octopus

Bayesian haplotype-based mutation calling

samwell

Samwell: a python package for using genomic files... well

AIMsetfinder

AIMsetfinder is a collection of Rscripts to identify sets of Ancestry Informative Markers (AIMs), that minimize the logloss error of a naive Bayes classifier.

awesome_bioinformatics_consultants

circe

Yet another JSON library for Scala

cvbio

Artisanal 🤣 bioinformatics tools and pipelines in Scala

dx-toolkit

DNAnexus platform client libraries

ExpansionHunter

A tool for estimating repeat sizes

GenomicSQLite

Genomics Extension for SQLite

linguist

Language Savant. If your repository's language is being reported incorrectly, send us a pull request!

manta

Structural variant and indel caller for mapped sequencing data

miniwdl-feedstock

A conda-smithy repository for miniwdl.

MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

mypy

Optional static typing for Python 3 and 2 (PEP 484)

nextflow

A DSL for data-driven computational pipelines

nf-tower

Nextflow Tower system

nh13

ORFquant

An R package for Splice-aware quantification of translation using Ribo-seq data

RiboseQC

Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.

somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

wdl

Workflow Description Language - Specification and Implementations

yq-feedstock

A conda-smithy repository for yq.