DataPLANT's repositories
web-components
DataPLANT branded web-components for diverse elements. Used in knowledgebase and main pages.
ARCTokenization
Definition of controlled vocabulary tokens and library to tokenize ARC metadata into these tokens
ARC_ontology
Repository containing the ARC ontology (currently only ISA-JSON model; cwl is wip (runs & workflows))
arcCommander-docs
ArcCommander
Nfdi4Plants.Fornax
Fornax library and template for nfdi4plants/web-components used as docs framework.
user-stories
user stories for tools in the DataPLANT stack via github issues
AnnotationPrinciples
Draft of best practices for data and workflow annotation
arc-to-invenio
Automatic building of a Docker container for converting ARCs to Invenio Metadata
converters
Converters for different endpoint repositories
dataplant-keycloak-theme
The official DataPLANT keycloak theme
teaching-materials-concept
Working repo for NFDI Cordi Abstract
invenio-test-arc
Snapshot of a small test arc to test invenio export and arc validation workflows
arcRegistry
provides a global view of ARCs and metadata search
exceljs
Excel Workbook Manager fork compatible with .NET OpenXML standard.
fastQC_quality
This is a python script for the analysis and summary of fastqc outputs. It is based on the output zip files. The script first reads the fastqc_data.txt file module by module.
git-build
Git Source Code Mirror - This is a publish-only repository but pull requests can be turned into patches to the mailing list via GitGitGadget (https://gitgitgadget.github.io/). Please follow Documentation/SubmittingPatches procedure for any of your improvements.
ISADotNet-docs
Contains documentation for ISADotNet
Swate-docs
https://nfdi4plants.github.io/Swate-docs/
webqc
Web based raw data quality control tool (prototype)