neuropil

tutorials

Learn to do common Voytek Lab things.

gramm

Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualizations. Gramm is inspired by R's ggplot2 library.

ggplot2-book

ggplot2: elegant graphics for data analysis

phantomas

Create realistic digital phantoms in diffusion MRI.

asetsMatlabMaxFlow

Matlab implementation of continuous max flow variants

sound-rnn

Generating sound with recurrent neural networks

everything

An index of all our open-source data, analysis, libraries, tools, and guides.

GradientDescentExample

Example demonstrating how gradient descent may be used to solve a linear regression problem

opass

A family of online spike sorting algorithms

python-viz-intro

Introduction to data visualization in Python, including plotting data from NetCDF files. Originally created for a Short Course in Data Assimilation and Visualization at the University of Reading, September 2014.

DeBaCl

Density Based Clustering (DeBaCl) Toolbox

skflow

Simplified interface for TensorFlow (mimicking Scikit Learn) for Deep Learning

machine-learning-specialization

Hack

A typeface designed for source code

DeepLearnToolbox

Matlab/Octave toolbox for deep learning. Includes Deep Belief Nets, Stacked Autoencoders, Convolutional Neural Nets, Convolutional Autoencoders and vanilla Neural Nets. Each method has examples to get you started.

deepdream

supervised_GMRA

code base for implementing supervised GMRA, including classification and regression

bat-country

A lightweight, extendible, easy to use Python package for deep dreaming and image generation with Caffe and CNNs.

DAT5

General Assembly's Data Science course in Washington, DC

data-science-ipython-notebooks

Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

WVPlots

Pre-packaged plots in R

DeviumWeb

Interactive multivariate data analysis in R implemented in shiny.

rodeo

A data science IDE for Python

probability_cheatsheet

A comprehensive 10-page probability cheatsheet that covers a semester's worth of introduction to probability.

ndgrutedb

Pipeline and tools for estimating human connectomes from Diffusion, Structural, and Functional MRI

PyTagCloud

Create beautiful tag clouds as images or HTML

RMendeley

:no_entry: ARCHIVED :no_entry: Interface to Mendeley API methods

synaptic

architecture-free neural network library for node.js and the browser

vistasoft

VISTASOFT is the main software repository of the VISTA lab at Stanford University.

sand

Statistical Analysis of Network Data with R, 2nd Edition