Justin Kiggins's repositories
napari_pyclesperanto_assistant
GPU-accelerated general purpose image processing and image analysis in napari
brainreg-napari
Automated 3D brain registration in napari with support for multiple species and atlases.
cellfinder-napari
Efficient cell detection in large images using cellfinder (https://brainglobe.info/cellfinder) in napari
cellpose-napari
napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
cookiecutter-napari-plugin
Cookiecutter for napari plugins
elastix_napari
A napari plugin for itk-elastix
meeting-notes
Notes from weekly napari meetings
napari-allencell-segmenter
A plugin that enables image segmentation provided by Allen Institute for Cell Science
napari-btrack-reader
Napari plugin to load btrack files
napari-hub-collections
collections of plugins for the napari hub
napari-imc
Imaging Mass Cytometry (IMC) file type support for napari
napari-ndtiffs
A napari plugin to load & deskew folders of lattice light sheet TIFFs
napari-ome-zarr
A reader for zarr backed OME-NGFF images
napari-plugin-devtools
A repo with tools and services for napari plugin developers
napari-spacetx-explorer
A simple plugin for an interactive visualization of spatial omics data.
napari-tracks-reader
napari reader plugin for tracking
napari-yapic-prediction
Image segmentation prediction tool that uses trained YAPiC model and performs image segmentation directly in Napari.
open-science
curated links and customized materials to support biomedical researchers in implementing open science approaches
PlatyMatch
Accepted at BioImage Computing Workshop in ECCV, 2020
rst-napari
Code for finding ontology term matches in Napari plugin descriptions
spiketools
Tools for analyzing spiking data.