ncbo / umls2rdf

These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.

http://bioportal.bioontology.org/

ncbo/umls2rdf Issues

mysqlclient instead of MySQLdb?
Closed 2 months ago2
French version of MST-FRE isn't French
Closed 2 months ago4
Wrong generation of literals
Closed 2 months ago1
Use versioned source abbreviations for version numbers
Updated 2 months ago3
E with acute accent generated incorrectly in ICD10CM TTL file
Closed 3 months ago5
LOINC Classes over SKOS Concepts
Updated a year ago1
Use LOINC URIs?
Updated a year ago
Missing lots of triples caused by overly selective query
Updated 2 years ago6
Centralized place for information on loading datasource
Updated 2 years ago
loss of information in SNOMED_CT?
Updated 3 years ago
label creator
Closed 3 years ago
Remove CPT from umls.conf before the next import (2020AA)
Closed 3 years ago
Questions about umls2rdf
Closed 3 years ago1
Remove NDFRT and add MEDRT to umls.conf before the next import (2018AB)
Updated 5 years ago5
MESH concept hierarchy in BioPortal differs from NLM sites
Updated 5 years ago
Incorrect encoding introduced during UMLS import
Closed 5 years ago5
Some RXCUI values possibly incorrect in RXNORM
Updated 5 years ago
Still "writing" MTHSPL triples after 24 hrs, even with 244 GB RAM
Updated 5 years ago2
MRSAT and attributes on RELs
Closed 6 years ago
Problems generating some UMLS2018AA sources with umls2rdf
Updated 6 years ago9
Documentation suggestion
Closed 6 years ago3
Python version?
Closed 7 years ago3
retired concepts
Updated 7 years ago10
Loading on CODE vs on CUI
Closed 8 years ago2
questions about the UMLS 2 RDF script
Closed 8 years ago4
Adding the possibility to choose the UMLS base URI
Closed 10 years ago3
Fix the \" characters that cause a parsing bug
Closed 10 years ago3
Generate OWL properties for MRREL relations
Closed 10 years ago
Proper export of the UMLS Semantic Network
Closed 10 years ago5
Assign proper language to labels when exporting sources other than English ones
Closed 10 years ago1
Non-UTF8 characters in ICD9CM and ICD10CM
Closed 10 years ago
Memory Error during converting large terminologies
Closed 11 years ago7
Error Importing Turtle Files into Protege 4.3 - Help Requested
Closed 11 years ago3
Error MySQL dropping connection / running out of memory
Closed 11 years ago6