nbokulich

RESCRIPt

REference Sequence annotation and CuRatIon Pipeline

sysbio_course_2022

.github

DataVisualizationBook

JupyterBook on data visualization for Food Scientists.

docs

Source repository for https://docs.qiime2.org

genome-sampler

hello-microbiome

HPV-multiOmics

pretrained-feature-classifiers

q2-assembly

QIIME 2 plugin for (meta)genome assembly.

q2-clawback

This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org.

q2-coordinates

methods for geographic mapping of qiime2 artifact data or metadata

q2-diversity

q2-feature-classifier

QIIME 2 plugin supporting taxonomic classification

q2-fondue

Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere

q2-longitudinal

QIIME 2 plugin for paired sample comparisons

q2-makarsa

A QIIME 2 plugin to generate and visualise microbial networks.

q2-moshpit

MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking

q2-moulinette

q2-phylogenomics

Phylogenomics toolkit and pipelines

q2-quality-control

A QIIME2 plugin for quality control of sequence and feature data

q2-sample-classifier

QIIME2 plugin for machine learning prediction of sample data.

q2-shogun

A QIIME 2 plugin wrapper for the SHOGUN shallow shotgun sequencing taxonomy profiler

q2-stats

q2-taxa

q2-types

Definitions of common QIIME 2 types.

q2-types-genomics

QIIME 2 types for genomics plugins.

q2-vizard

readytowear

Ready-made Taxonomic Weights Repository

rhapsody

Neural networks for microbe-metabolite interaction analysis