Naupaka Zimmerman's repositories
2017-03-05-ucsf-r
Website for SWC workshop to be held on March 5 and 6 at UCSF in San Francisco, CA.
research-compendium-website
A template for creating a research compendium for a website interface
2017-09-06_bioinformatics_psm_exercise
Demo repository for USF PSM Bioinformatics class
2017-09-06_git_assignment
Assignment for practicing bash scripting and Git Flow.
assessment-projects
Community wide assessment projects for Data and Software Carpentry
automation-RR-Jupyter
Automation with Jupyter notebooks
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
DI-NEON-participants
A repository for all participant code & documents during the NEON Data Institutes
dockerfile-rstudio
Using RStudio with Binder with a custom Dockerfile
eval-in-repl
Consistent ESS-like eval interface for various REPLs
introduction-RR-Jupyter
Introduction materials for Reproducible Research Curriculum with Jupyter notebook
onboarding
rOpenSci Onboarding
organization-RR-Jupyter
Data and project organization for Reproducible Research with the Jupyter notebook curriculum
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
publication-RR-Jupyter
Publication and sharing with Jupyter notebooks for reproducible research
publish-tinderbox-to-devonthink
Publish from Tinderbox to DEVONthink
R-genomics
Lesson on data analysis and visualization in R for genomics
slide-shows
A test space to build reveal.js slideshows
workshop-introduction-RR-Jupyter
Workshop introduction
workshop-RR-Jupyter
Overview of Jupyter RR workshop