Naupaka Zimmerman's repositories
esa_ggplot2_2019
Materials for a workshop on using ggplot2 for data visualization, held at the 2019 Ecological Society of America Annual Meeting in Louisville, KY
2020F-usfca-btec-640.github.io
Repository for a coding tips website written by the Fall 2020 BTEC640 Bioinformatics class at the University of San Francisco.
dc_genomics_docker
Container development for Data Carpentry Genomics lessons
teachers_pet
command line tool to help teachers use GitHub in their classrooms
ubuntu-sshd
Dockerized Ubuntu SSH service
2019-03-09_forking_cloning_PR_UCSF_demo
This is for practice forking, cloning, PRing
2019-03-09_UCSF_SWC_git_demo
This is a demo repo for teaching GitHub and git at a Software Carpentry workshop held at UCSF Mission Bay.
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
classroomNotes
Notes on academic-related things
docker-github-runner
Run GitHub Actions on self-hosted runner using Docker.
ecoevo.social-docs
Things to know about ecoevo.social
genomics-r-intro
Intro to R and RStudio for Genomics
NEON-utilities
Utilities and scripts for working with NEON data. Currently: an R package with functions to join (stack) the month-by-site files in downloaded NEON data, to convert data to geoCSV format, and to download data from the API.
organization-genomics
Project Organization and Management for Genomics
R-genomics-in-development
Development repo for a revamp of the Data Carpentry R genomics lessons
r-novice-gapminder
R for Reproducible Scientific Analysis
eds-text
Draft for a book on Environmental Data Science using Quarto template for Chapman & Hall/CRC books
NEONSoils
R Code to analyze and process soil respiration fluxes at NEON sites
orgpaper
Reproducible Research Papers using Org-mode and R: A Guide