natverse / nat.templatebrains

Support for 3D template brains used as targets for image registration

https://natverse.org/nat.templatebrains/

natverse/nat.templatebrains Issues

Automatically fit thin plate splines for a bridging graph.
Updated 2 years ago1
'~' not expanded when calculating local reg dirs during install
Closed 2 years ago8
fix bugs in all_templatebrains
Closed 4 years ago
can we teach xform_brain to mirror as well
Updated 4 years ago6
Support for templatebrains that share same physical space
Updated 4 years ago
templatebrain constructor does not process origin
Closed 4 years ago1
Add support for via to shortest_bridging_seq (and xform_brain)
Closed 4 years ago1
bridging_graph(reciprocal=F) gives incorrect results
Closed 4 years ago1
Add function to find all templatebrains
Closed 5 years ago1
print.templatebrain should recycle the unit when it has length 1
Closed 5 years ago1
Allow nat.templatebrains to have backup registrations e.g. for points that fail to transform
Updated 5 years ago1
Uninformative error from CMTK with kcs20 example
Closed 5 years ago6
xform_brain should not require an explicit target specification for image data
Closed 5 years ago4
Allow non CMTK mirroring registrations
Updated 5 years ago
xform_brain should not try to transform when sample and reference are identical
Closed 6 years ago1
shortest_bridging_seq should complain if template brain does not exist in graph
Closed 6 years ago
templatebrain constructor should not need all boundingbox/origin etc fields to be specified
Closed 7 years ago1
as.templatebrain.im3d should not need an im3d made from a file
Closed 7 years ago
xform_brain should tag objects with their space
Closed 8 years ago6
xform_brain should give better error when sample unknown
Closed 8 years ago2
R CMD check is not running tests
Closed 8 years ago1
teach plot3d.templatebrain to work with regtemplate
Closed 8 years ago
add_reglist should not return anything (visibly)
Closed 8 years ago
xform_brain should work with other registration classes
Closed 8 years ago3
cache some aspects of finding registrations
Closed 8 years ago1
fix inversion (swapping) of reglists on disk
Closed 8 years ago1
Reducing alpha of segmented surface template brains slows interactivity
Closed 8 years ago5
xform_brain should have an option for an additional registrations
Updated 8 years ago
mirror_brain should be able to handle image data
Closed 9 years ago1
fix downloading of git repos when no git user has been set
Closed 9 years ago8
download_reg_repo should ensure that base directory exists
Closed 9 years ago1
CRAN release of 0.6.1
Closed 9 years ago1
Use rappdirs for storing registrations?
Closed 9 years ago3
bug in mirror_brain for non-zero origin
Closed 9 years ago
Add doi field to templatebrains object
Closed 9 years ago1
add template objects for all brains in the study
Closed 9 years ago
Graph search for concatenation of bridges
Closed 9 years ago1
xform_brain / bridging_sequence should work for images
Closed 9 years ago1
bridging_sequence docs contain an error re image data
Closed 10 years ago4
Add generic write.landmarks function
Closed 10 years ago
write.neurons('file.zip') ignores args including subdir
Closed 10 years ago
CRAN release?
Closed 10 years ago3
setup token for travis children build
Closed 10 years ago2
extdata needs to know which package to search
Closed 10 years ago1
store all registrations associated with templatebrain in one directory
Closed 10 years ago2
break circular dependency on nat.flybrains
Closed 10 years ago