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Nandita R (nandr0id)

nandr0id

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Company:Noblis

Location:Washington, DC

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Nandita R's starred repositories

snakemake-training

Increasingly complete example bioinformatics workflow

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SARS-CoV-2-freebayes

Analysis of SARS-CoV-2 genome variants collected with freebayes variant caller

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SARS-CoV-2-RBD_MAP_HAARVI_sera

Mutational antigenic profiling of SARS-CoV-2 RBD against human convalescent sera from the HAARVI cohort

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vcfiterator

Python module for iterating over a VCF file, parsing and generating data structures.

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Awesome-CV

:page_facing_up: Awesome CV is LaTeX template for your outstanding job application

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medaka

Sequence correction provided by ONT Research

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SARS-CoV-2_GTG

Genomic Tech's COVID sequencing

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catch

A package for designing compact and comprehensive capture probe sets.

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viral-ngs

Viral genomics analysis pipelines

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ncov-tools

Small collection of tools for performing quality control on coronavirus sequencing data and genomes

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Arduino_16x2LCD_INA219

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pi_ina219

This Python library supports the INA219 voltage, current and power monitor from Texas Instruments with a Raspberry Pi using the I2C bus. The intent of the library is to make it easy to use the quite complex functionality of this sensor.

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bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

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Complete-Python-3-Bootcamp

Course Files for Complete Python 3 Bootcamp Course on Udemy

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biopython

Official git repository for Biopython (originally converted from CVS)

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Pan-Coronavirus-Gene-Regulatory-Networks

We aim to identify consensus gene sets/modules that are consistently dysregulated during infection by various coronaviruses with the aim of enhancing the understanding of SARS-CoV-2 infection and how it causes COVID-19.

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BiocSwirl

BiocSwirl is a series of in-depth swirlify generated courses used to teach bioinformatics workflows in R/Bioconductor using an interactive and easy to digest format. This project was the People's Choice Award for the Vancouver Bioinformatics Hackathon Hackseq2019.

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biopython-coronavirus

Biopython Jupyter Notebook tutorial to characterize a small genome

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biozsh

the z in bioinformatics

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scDeepCluster

scDeepCluster for Single Cell RNA-seq data

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mathart

Create mathematical art with R

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vdjtools

Post-analysis of immune repertoire sequencing data

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rv144

R code to generate the figure of RV144 transcriptomic study

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RNA-seq-analysis

RNAseq analysis notes from Ming Tang

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caleydo

Caleydo - Visualization for Molecular Biology

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