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Nandita R (nandr0id)

nandr0id

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Company:Noblis

Location:Washington, DC

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Nandita R's repositories

auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

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galaxy-tools

FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.

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gatk3-4-rnaseq-germline-snps-indels

Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools

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genomics

Scripts, utilities and programs for genomic bioinformatics.

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Intro-to-R-with-DGE

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mixcr

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

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oneliners

Useful bash one-liners for bioinformatics.

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PERL

PERL code examples

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Python

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R

R scripts for data wrangling

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seurat

R toolkit for single cell genomics

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SnpEff

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vdjtools

Post-analysis of immune repertoire sequencing data

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