nadeemlab / SPT

Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images

Home Page:https://oncopathtk.org

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The Spatial Profiling Toolbox (SPT) is a lightweight deployment framework for cell analysis computation in the context of histopathology. The pipelines are orchestrated with Nextflow and support Singularity/Docker containerization.

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Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images

https://oncopathtk.org

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Language:Python 48.9%Language:HTML 42.8%Language:Shell 3.3%Language:Makefile 3.1%Language:Nextflow 1.1%Language:Dockerfile 0.4%Language:Jinja 0.3%