mwhall

Ananke2

Ananke2: A Python package for generating succinct indexes of microbial community structure

QUOREM

QUOREM: Query, Unify, and Organize Research on the Ecology of Microorganisms

try_git

Ananke_PeerJ

Scripts useful for reproducing the results in the Ananke manuscript published in PeerJ.

biom-format

The Biological Observation Matrix (BIOM) Format Project

BMCMicrobiology_Preterm_Birth

An in-progress analysis of the neonatal microbiome. This repository holds QIIME artifacts and Jupyter notebooks.

core

Freesewing is an open source platform for made-to-measure sewing patterns

Experimental_Gingivitis

Data and scripts for an in-progress analysis of microbial taxonomic shifts in experimental gingivitis.

VAware

data

Data API for freesewing

demo

Stand-along version of the freesewing demo

ExpressBetaDiversity

Taxon- and phylogenetic-based beta diversity measures.

github-slideshow

A robot powered training repository :robot:

JDR_Refractory_Periodontitis

Data files for an in-progress manuscript on Refractory Periodontitis.

merge-conflicts

metahcr_v1

MetaHCR - Metagenomics on Hydrocarbon Resources

MolEcol_Arctic_Soil

Scripts and data files for the bulk of the analysis for an under-review manuscript surveying the effect of depth on the microbial community of Arctic soils.

mwhall.github.io

mygithubpage

Pairiscope

A package that leverages bloom filters to store discretized microbial pair relationships in a relatively small memory footprint

PeerJ_Culex_nigripalpus

Data and scripts for an in-progress analysis of the Culex nigripalpus microbiome from Floridian mosquitoes.

photobooth

q2-dada2

QIIME 2 plugin wrapping DADA2

q2-plotly

q2_ananke

Time-series clustering -- now for QIIME2!

seqan

SeqAn's official repository.

site

The freesewing website

Useful_QIIME2_Datasets

Just as it says on the tin.