Michael Hall's repositories
Ananke_PeerJ
Scripts useful for reproducing the results in the Ananke manuscript published in PeerJ.
biom-format
The Biological Observation Matrix (BIOM) Format Project
BMCMicrobiology_Preterm_Birth
An in-progress analysis of the neonatal microbiome. This repository holds QIIME artifacts and Jupyter notebooks.
Experimental_Gingivitis
Data and scripts for an in-progress analysis of microbial taxonomic shifts in experimental gingivitis.
ExpressBetaDiversity
Taxon- and phylogenetic-based beta diversity measures.
github-slideshow
A robot powered training repository :robot:
JDR_Refractory_Periodontitis
Data files for an in-progress manuscript on Refractory Periodontitis.
metahcr_v1
MetaHCR - Metagenomics on Hydrocarbon Resources
MolEcol_Arctic_Soil
Scripts and data files for the bulk of the analysis for an under-review manuscript surveying the effect of depth on the microbial community of Arctic soils.
Pairiscope
A package that leverages bloom filters to store discretized microbial pair relationships in a relatively small memory footprint
PeerJ_Culex_nigripalpus
Data and scripts for an in-progress analysis of the Culex nigripalpus microbiome from Floridian mosquitoes.
Useful_QIIME2_Datasets
Just as it says on the tin.