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Dr. Josh Neufeld's Lab (neufeld)

Dr. Josh Neufeld's Lab

neufeld

Geek Repo

Location:Waterloo, Ontario

Home Page:https://uwaterloo.ca/biology/people-profiles/josh-d-neufeld

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Dr. Josh Neufeld's Lab's repositories

pandaseq

PAired-eND Assembler for DNA sequences

Language:CLicense:GPL-3.0Stargazers:128Issues:14Issues:80

AXIOME

AXIOME - Automation, Extension, and Integration Of Microbial Ecology: Helper tools to make managing numerical ecology pipelines easier

Language:ValaLicense:GPL-3.0Stargazers:13Issues:10Issues:7

AXIOME3

Automated QIIME 2 Workflow wrapped in Luigi Framework currently in early development

Language:PythonLicense:BSD-3-ClauseStargazers:8Issues:6Issues:3

SSUnique

SSUnique is a software tool designed to process unclassified and/ or rare fractions of SSU rRNA gene sequence libraries. Specifically, SSUnique generates a network- based visualization of taxonomic assignments then extracts unclassified and/or rare sequence groups, filtering these groups for phylogenetic novelty.

Language:RStargazers:6Issues:7Issues:0

AXIOME3-GUI

AXIOME3 Full Stack Project

Language:PythonLicense:BSD-3-ClauseStargazers:3Issues:4Issues:10

axiometic

A GUI companion for AXIOME

Language:PythonStargazers:3Issues:8Issues:0

pandaseq-sam

PAired-eND Assembler for DNA sequences – SAM/BAM format support

Language:CLicense:GPL-3.0Stargazers:3Issues:8Issues:0

MESaS

Microbial Ecology Scripts and Stuff

Language:RLicense:MITStargazers:1Issues:9Issues:0

neufeld.github.com

Pages repository for Neufeld lab

Language:JavaScriptStargazers:1Issues:7Issues:0

lab-server-training

Server training for the Neufeld lab

License:BSD-3-ClauseStargazers:0Issues:5Issues:0

AXIOME2

Automation, eXtension, and Integration of Microbial Ecology

Language:PythonLicense:NOASSERTIONStargazers:0Issues:9Issues:10