Marius van den Beek's repositories
BioHackathon-projects-2019
This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage projects, publish materials, create code, etc.
dagobah-training
Galaxy admin trainings for aspiring Skywalkers
galaxy-tools
FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.
actions-publish-docker
This GitHub action allows you to create and publish Docker images into a Docker registry.
ansible-influxdb
Ansible Galaxy InfluxDB Role
bedtools2
A powerful toolset for genome arithmetic.
cookiecutter-pypackage
Cookiecutter template for a Python package.
deepTools
Tools to process and analyze deep sequencing data.
docker-jupyter-notebook
:whale: :microscope: :books: Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy
docker-rstudio-notebook
RStudio as a Galaxy Interactive Environment
fiona-feedstock
A conda-smithy repository for fiona.
graphviz-feedstock
A conda-smithy repository for graphviz.
isa-rwval
Read/write/validation packages for the ISA tools API
minikube-setup-action
Installs minikube in your Github Actions workflow.
planemo-action
For github actions
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
pysam-compare-reads
cythonized function to compare reads by name
pytest-xdist
pytest plugin for distributed testing and loop-on-failures testing modes.
sequence_utils
Galaxy's sequence utilities are a set of Python modules for reading, analyzing, and converting sequence formats.
singularity
Singularity: Application containers for Linux
twill
A simple command-line Web browser, for testing and Web automation.
twill3
Twill refactor for Python3
usegalaxy-eu-tools
List of tools included in https://usegalaxy.eu
vscode-python
Python extension for Visual Studio Code