msharrock

ICP_NN

Biomarker-Segmentation-Tutorial

NeuroKit

NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing

Biomarker-Classification-Tutorial

GCP-Image-Viewer

GCP-Image-Viewer

ed-monitor-data

ome-zarr-py

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

medloader

TFlow/PyTorch dataloaders for medical datasets

python-best-practices-cookiecutter

Python best practices project cookiecutter 🍪

Viewers

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

kfr

Fast, modern C++ DSP framework, FFT, Sample Rate Conversion, FIR/IIR/Biquad Filters (SSE, AVX, AVX-512, ARM NEON)

intellivue

plt

Programming Language Theory λΠ

Fast-Symmetric-Diffeomorphic-Image-Registration-with-Convolutional-Neural-Networks

Fast Symmetric Diffeomorphic Image Registration with Convolutional Neural Networks

automatic-watermark-detection

Project for Digital Image Processing

ScientificImageAnalysisVisualizationAndArtificialIntelligenceCourse

SierpinskiBlankets

investigating recursion in two flavors to create Sierpinski Gaskets and Sierpinski Carpets.

ProceduralSnowflakes

investigates recursion to plot one dimensional fractals. Draws pretty pictures.

OPEN-DESIRE

Dr G. A. Korn's experiment-protocol interpreter and differential equation solver

Simulation-of-State-Space-Models-of-Dynamical-Systems-in-Cpp--Eigen-Matrix-Library-Tutorial

dicomsort

A project to provide custom sorting and renaming of dicom files

mc_dropconnect

The official implementation of the MC-Dropconnect method for Uncertainty Estimation in DNNs

DeepDicomSort

Automatic sorting of brain MRI scans by scan type

NeuroGPU

4DFlowNet

Super Resolution 4D Flow MRI using Residual Neural Network

Probabilistic-Programming-and-Bayesian-Methods-for-Hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

3D_CycleGAN

GAN for image-to-image translation of 3D T1w and T2w anatomical MR images

brainextractor

A re-implementation of FSL's Brain Extraction Tool in Python

brainrender

a python based software for visualization of neuroanatomical and morphological data.

CTBrainSegmentation

Multi-class U-Net for head CT segmentation