Matt Sharrock's repositories
3D-brain-segmentation
This is a repository containing code to Paper "Optimized High Resolution 3D Dense-U-Net Network for Brain and Spine Segmentation" published at MDPI Applied sciences journal - https://www.mdpi.com/2076-3417/9/3/404 .
actions-python-tests
Example for running Python unit tests with GitHub Actions
ANTsPy
Advanced Normalization Tools in Python
ANTsRNet
Medical image analysis framework merging ANTsR and deep learning
awesome-gcp-certifications
Google Cloud Platform Certification resources.
book-exercises
Exercise solutions for programming books.
cookiecutter-pytorch
A Cookiecutter template for PyTorch Deep Learning projects.
daft
Render probabilistic graphical models using matplotlib
deepbrain
Deep Learning tools for brain medical images
DeepVOG
Pupil segmentation and gaze estimation using fully convolutional neural networks
fatbACPC
Brain Imaging Accessoires: Fully automatic tilting of brainscans to Anterior Commissure - Posterior Commissure line (fatbACPC).
HistoGAN
Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.
horos-bids-output
Horos plugin for BIDS output. Stanford Center for Reproducible Neuroscience coding sprint 2017.
lagomorph
Image Registration and Computational Anatomy in PyTorch
Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
ModelsGenesis
Official Keras Implementation and Pre-trained Models for Models Genesis - MICCAI 2019
neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
NPH_Prediction
Code to accompany NPH Prediction paper.
pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
pybadges
A Python library for creating Github-style badges
pyxnat
XNAT in Python
readthedocs.org
The source code that powers readthedocs.org
synthnn
deep neural network based MR/CT brain image synthesis
tensornets
High level network definitions with pre-trained weights in TensorFlow
voxvol
Voxel Volume Calculation and Discretization of ROI in Osirix
vscode-cpptools
Official repository for filing issues against and getting support for the Microsoft C/C++ extension for VS Code