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Martin R. Smith (ms609)

ms609

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Company:Department of Earth Sciences, Durham University

Location:Durham, UK

Home Page:https://orcid.org/0000-0001-5660-1727

Twitter:@PalaeoSmith

Github PK Tool:Github PK Tool

Martin R. Smith's repositories

usage

Package download statistics

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styles

Official repository for Citation Style Language (CSL) citation styles.

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preferences

Preferences for software

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citation-bot

Citation bot is a tool to expand and format references at Wikipedia. It retrieves citation data from a variety of sources including CrossRef (DOI), PMID, PMC and JSTOR, and returns a formatted citation. Report bugs at https://en.wikipedia.org/wiki/User_talk:Citation_bot

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revbayes

Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

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LetterMatch

Fun for infant typists

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TreeDist

Calculate distances between phylogenetic trees in R

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treess

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TreeTools

Create, modify and analyse phylogenetic trees in R

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TreeSearch

R package for phylogenetic tree search under custom optimality criteria

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brio

Basic R Input Output

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PlotTools

Tools for plotting with base R

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Quartet

R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)

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Ternary

Create ternary plots in R

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trevosim

TREvoSim - The [Tr]ee [Evo]lutionary [Sim]ulator program

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revbayes.github.io

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TernaryApp

Shiny app for creating ternary plots with the R package 'Ternary'

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packages

R packages

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matrixes

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TreeDistData

Data and vignettes to accompany TreeDist packages

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MorphoBank

Process MorphoBank projects in R

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ape

analysis of phylogenetics and evolution

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CongreveLamsdell2016

Data generated from Congreve and Lamsdell (2016). See readme below for documentation.

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OReillyEtAl2016

Data generated from O'Reilly et al. (2016). See Readme below for documentation.

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actions

GitHub actions for the R language

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Rogue

Identify rogue taxa in phylogenetic trees within R

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pandocker

Docker image for pandoc with xelatex

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ms609

Config files for my GitHub profile.

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BEASTmasteR

R code for writing Beast2 XML (especially morphology/tip-dating)

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RogueNaRok

A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf stability index and taxonomic instability index

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