ms609

citation-bot

Citation bot is a tool to expand and format references at Wikipedia. It retrieves citation data from a variety of sources including CrossRef (DOI), PMID, PMC and JSTOR, and returns a formatted citation. Report bugs at https://en.wikipedia.org/wiki/User_talk:Citation_bot

Ternary

Create ternary plots in R

TreeDist

Calculate distances between phylogenetic trees in R

TreeTools

Create, modify and analyse phylogenetic trees in R

Quartet

R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)

TreeSearch

R package for phylogenetic tree search under custom optimality criteria

Rogue

Identify rogue taxa in phylogenetic trees within R

actions

GitHub actions for the R language

ape

analysis of phylogenetics and evolution

beast2

Bayesian Evolutionary Analysis by Sampling Trees

BEASTmasteR

R code for writing Beast2 XML (especially morphology/tip-dating)

climenv

climenv: download, extract and visualise climatic and elevation data

CongreveLamsdell2016

Data generated from Congreve and Lamsdell (2016). See readme below for documentation.

distance

doconv

geodata

download geographic data

matrixes

MorphoBank

Process MorphoBank projects in R

ms609

Config files for my GitHub profile.

navigator

OReillyEtAl2016

Data generated from O'Reilly et al. (2016). See Readme below for documentation.

packages

R packages

pandocker

Docker image for pandoc with xelatex

phylo-workflow-rotadiscus

Rotadiscus analysis

PlotTools

Tools for plotting with base R

preferences

Preferences for software

RcppHungarian

Hungarian Algorithm for solving minimum bipartite matching problems

RogueNaRok

A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf stability index and taxonomic instability index

styles

Official repository for Citation Style Language (CSL) citation styles.

usage

Package download statistics