Martin R. Smith's repositories
citation-bot
Citation bot is a tool to expand and format references at Wikipedia. It retrieves citation data from a variety of sources including CrossRef (DOI), PMID, PMC and JSTOR, and returns a formatted citation. Report bugs at https://en.wikipedia.org/wiki/User_talk:Citation_bot
TreeSearch
R package for phylogenetic tree search under custom optimality criteria
BEASTmasteR
R code for writing Beast2 XML (especially morphology/tip-dating)
climenv
climenv: download, extract and visualise climatic and elevation data
CongreveLamsdell2016
Data generated from Congreve and Lamsdell (2016). See readme below for documentation.
MorphoBank
Process MorphoBank projects in R
OReillyEtAl2016
Data generated from O'Reilly et al. (2016). See Readme below for documentation.
phylo-workflow-rotadiscus
Rotadiscus analysis
preferences
Preferences for software
RcppHungarian
Hungarian Algorithm for solving minimum bipartite matching problems
RogueNaRok
A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf stability index and taxonomic instability index
TreeDistData
Data and vignettes to accompany TreeDist packages
trevosim
TREvoSim - The [Tr]ee [Evo]lutionary [Sim]ulator program