Thomas Roder's repositories
orthofinder-tools
Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to roary_plots
flower-plot
A Python function that makes flower plots.
abri-annotate
Run ABRicate using multiple reference databases and maps the results onto genes
DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
fast-fisher
A fast, precise, pure Python implementation of Fisher's exact test
Frantic-Rules
Simple website to quickly browse the rules of the Frantic card game: https://rulefactory.ch/frantic/
gene-loci-comparison
Create fancy (bokeh) gene locus plots from GenBank files!
get-tax-info
Convert NCBI TaxIDs to scientific species names and vice-versa
ncbi-blast
Simple Python wrapper for NCBI Blast.
dot
Dot: An interactive dot plot viewer for comparative genomics. Uses mummer / mummer4 to generate dotplots.
kegg-map-wizard
Downloads pathway maps from KEGG, creates Python obejcts, converts them into SVG, allows processing in modern browsers.
Bacterial_genome_assembly
Bacterial genome assembly
biojs-vis-blasterjs
BlasterJS - an open source JS library to display Blast results
brickopore
Blocksford Brickopore LEGOseq 2000
BrickoporeGUI
GUI for Blocksford Brickopore
cached-contingency
Compute and cache Fisher's exact test and Boschloo's test more efficiently!
Campus-Cloud-UniBe-Uploader
Upload single files to campuscloud.unibe.ch with this simple bash script!
gendiscalpy
Python bindings to GenDisCal and addition of phylogenetic tree function
gnome-clipboard-history
Gnome Clipboard History is a Gnome extension that saves what you've copied into an easily accessible, searchable history panel.
jQuery-tagEditor
A powerful and lightweight tag editor plugin for jQuery.
mgwas-data-exploration-app
Data exploration app for large phenotypic datasets analyzed using mGWAS, originally developed for Scoary2
nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
openfortivpn_cookie_extractor
Get SVPNCOOKIE from Firefox and start openfortivpn
OrthoFinder
Phylogenetic orthology inference for comparative genomics
pypdf
A pure-python PDF library capable of splitting, merging, cropping, and transforming the pages of PDF files
Scoary
Pan-genome wide association studies