Thomas Roder's repositories
orthofinder-tools
Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to roary_plots
flower-plot
A Python function that makes flower plots.
kegg-map-wizard
Downloads pathway maps from KEGG, creates Python obejcts, converts them into SVG, allows processing in modern browsers.
ncbi-blast
Simple Python wrapper for NCBI Blast.
abri-annotate
Run ABRicate using multiple reference databases and maps the results onto genes
DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
fast-fisher
A fast, precise, pure Python implementation of Fisher's exact test
Frantic-Rules
Simple website to quickly browse the rules of the Frantic card game: https://rulefactory.ch/frantic/
gene-loci-comparison
Create fancy (bokeh) gene locus plots from GenBank files!
get-tax-info
Convert NCBI TaxIDs to scientific species names and vice-versa
dot
Dot: An interactive dot plot viewer for comparative genomics. Uses mummer / mummer4 to generate dotplots.
biojs-vis-blasterjs
BlasterJS - an open source JS library to display Blast results
biowasm
WebAssembly modules for genomics
brickopore
Blocksford Brickopore LEGOseq 2000
BrickoporeGUI
GUI for Blocksford Brickopore
cached-contingency
Compute and cache Fisher's exact test and Boschloo's test more efficiently!
Campus-Cloud-UniBe-Uploader
Upload single files to campuscloud.unibe.ch with this simple bash script!
gendiscalpy
Python bindings to GenDisCal and addition of phylogenetic tree function
gfaviz
Graphical interactive tool for the visualization of sequence graphs in GFA format.
gnome-clipboard-history
Gnome Clipboard History is a Gnome extension that saves what you've copied into an easily accessible, searchable history panel.
jQuery-tagEditor
A powerful and lightweight tag editor plugin for jQuery.
mgwas-data-exploration-app
Data exploration app for large phenotypic datasets analyzed using mGWAS, originally developed for Scoary2
nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
openfortivpn_cookie_extractor
Get SVPNCOOKIE from Firefox and start openfortivpn
OrthoFinder
Phylogenetic orthology inference for comparative genomics
pypdf
A pure-python PDF library capable of splitting, merging, cropping, and transforming the pages of PDF files
Scoary
Pan-genome wide association studies