Scoary2 associates orthogenes (e.g. generated using OrthoFinder or Roary to traits. It reports a list of genes sorted by strength of association per trait. The results can be explored interactively with a simple, static HTML/JS app.
Wiki
- Home
- Installation
- Usage
- Input
- Output
- Tutorial
- App
- Understanding the p values
- Usage as Python library
Paper
The Scoary2 preprint is now available on bioRxiv. Click here) to see it!
Roder, T. et al. Scoary2: Rapid association of phenotypic multi-omics data with microbial pan-genomes. BioRxiv (2023) doi:10.1101/2023.04.19.537353.