Medizinisches Proteom-Center, Medical Bioinformatics

pia

:books: :microscope: PIA - Protein Inference Algorithms

nf-cloud

A web interface for Nextflow

ProtGraph

ProtGraph - A Graph-Generator for Proteins

CalibraCurve

CalibraCurve

macpepdb

bionda

The biomarker database BIONDA performs text mining tasks using a dictioanry approach to identify diseases and poteincial biomarkers (lncRna, proteins, mirna and genes) in Europe PMC abstracts. The RE is sentence-based.

bipartite-peptide-protein-graphs

bppg

R Package for bipartite peptide-protein graphs

max-decoy

pia-tutorial

Tutorial for PIA - Protein Inference Algorithms

ProGFASTAGen

Protein-Graph-FASTA-Generation and Identification

ProtGraphREST

A REST-API for generated protein graphs

bioinfomatics_for_proteomics_tutorial_data

This is just data.

denbi_summerschool2023_py_exercises

Python exercises for the de.NBI Summer School 2023

macpepdb-web

pia-knime-nodes

This repository holds the declaration for KNIME nodes to use PIA

pia-web-interface

The web interface source for PIA

ProtStatsWF

Statistics Workflows for Proteomics Data

ProtStatsWF_NF

Nextflow scripts and workflows related to the ProtStatsWF R package for statistical analysis and visualization of proteomics data

QC_Quant

Quality control for quantitative proteomics data

bacterial-proteogenomic-pipeline

[DEPRECATED] The Bacterial Proteogenomic Pipeline

FiPSPi

PQI