molsim

alembic

⚗ A Jekyll boilerplate theme designed to be a starting point for any Jekyll website

CompBioCommons

Computational biology cookbook with reusable examples and learning materials.

cwltool

Common Workflow Language reference implementation

dnaplotlibNB

A test DNAplotlib notebook

DNAshapeR

R package for high-throughput DNA shape predictions and feature encoding

ete

ETE is a Python programming toolkit for building, comparing, annotating, manipulating and visualising trees. It provides both a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

forestry-demo

freesasa

C-library for calculating Solvent Accessible Surface Areas

HistoneDB

Browse all histone sequences by histone varaints

htmd

HTMD: Programming Environment for Molecular Discovery

HYDROID

Python package for analyzing hydroxyl-radical footprinting experiments of protein-DNA complexes

nuclLEGO

Nucleosome LEGO project

pypkg

A Python package to demonstrate best practices