Artificial Intelligence for Medicine and Science @ Harvard

Artificial Intelligence for Medicine and Science @ Harvard's repositories

TDC

Therapeutics Commons: Artificial Intelligence Foundation for Therapeutic Science

Language:Jupyter NotebookMIT958 27 114

nimfa

Nimfa: Nonnegative matrix factorization in Python

Language:PythonNOASSERTION533 36 53

decagon

Graph convolutional neural network for multirelational link prediction

Language:Jupyter NotebookMIT442 24 16

TFC-pretraining

Self-supervised contrastive learning for time series via time-frequency consistency

Language:PythonMIT401 5 31

PrimeKG

Precision Medicine Knowledge Graph (PrimeKG)

Language:Jupyter NotebookMIT354 11 17

graphml-tutorials

Tutorials for Machine Learning on Graphs

Language:Jupyter NotebookMIT204 9 1

SubGNN

Subgraph Neural Networks (NeurIPS 2020)

Language:PythonMIT186 9 27

Raindrop

Graph Neural Networks for Irregular Time Series

Language:PythonMIT159 7 13

GraphXAI

GraphXAI: Resource to support the development and evaluation of GNN explainers

Language:PythonMIT145 5 23

scikit-fusion

scikit-fusion: Data fusion via collective latent factor models

Language:PythonNOASSERTION141 14 3

G-Meta

Graph meta learning via local subgraphs (NeurIPS 2020)

Language:Python116 6 9

Raincoat

Domain Adaptation for Time Series Under Feature and Label Shifts

Language:Jupyter NotebookMIT103 3 12

ohmnet

OhmNet: Representation learning in multi-layer graphs

Language:PythonMIT78 7 6

GNNGuard

Defending graph neural networks against adversarial attacks (NeurIPS 2020)

Language:PythonNOASSERTION56 6 8

TxGNN

TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design

Language:Jupyter NotebookMIT55 3 6

SHEPHERD

SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases

Language:HTMLMIT38 6 5

GNNDelete

General Strategy for Unlearning in Graph Neural Networks

Language:PythonMIT34 7 5

crank

Prioritizing network communities

Language:C++MIT28 3 1

TimeX

Time series explainability via self-supervised model behavior consistency

Language:Python25 4 1

pathways

Disease pathways in the human interactome

Language:PythonMIT22 5 1

fastGNMF

Fast graph-regularized matrix factorization

Language:Python18 50

life-tree

Evolution of protein interactomes across the tree of life

Language:C++MIT7 30

patient-safety

Population-scale patient safety data reveal inequalities in adverse events before and during COVID-19 pandemic

Language:Jupyter NotebookMIT7 4 1

nimfa-ipynb

IPython notebooks demonstrating Nimfa's functionality

GPL-2.06 30

AWARE

AWARE: Contextualizing protein representations using deep learning on interactomes and single-cell experiments

Language:PythonMIT300

BMI702

Biomedical Artificial Intelligence

Language:HTMLMIT3 30

data-mining-unipv

Short Course on Data Mining at University of Pavia

Language:Jupyter NotebookBSD-3-Clause2 30

metapaths

Similarity search in heterogeneous knowledge graphs using meta paths.

Language:RMPL-2.01 10

mims-harvard.github.io

Lab website

Language:HTML1 10

hydra-zen

Configurable, reproducible, and scalable Python programs, via Hydra

Language:PythonMIT010