mikelove

mpra

bioc-refcard

Bioconductor cheat sheet

mikelove.github.io

Love Lab website

igvfR

R/Shiny demo accessing data via IGVF Catalog API

checkfiles

igvf_spdi_demo

plotgardener

alpine

Modeling and correcting fragment sequence bias for RNA-seq

tidySummarizedExperiment

Brings SummarizedExperiment to the tidyverse

pkgrevdocs

Training Material for Community Reviewers

awesome-multi-omics

List of software packages for multi-omics analysis

cd4-overlaps

bioconductor.org

Website for bioconductor.org

plyrangesMLmisc

miscellaneous ideas of plyranges implementations or extensions

plyranges

A grammar of genomic data transformation

s4demo

Minimal demo of a simple S4 method and class setup

ads2020

Advanced Data Science 2020 Edition

mrlocus

Older repo for MRLocus. See new website for software usage guide:

BioC2023

osteoblast-quant

swish-ase-assessment

ase-sim

boot-basics

preNivolumabOnNivolumab

EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment

PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

test_pydeseq2

tidybulk

Brings bulk and pseudobulk transcriptomics to the tidyverse

stageR

stageR package

plyrangesTximetaCaseStudy

A case study for the combination of plyranges and tximeta Bioconductor packages

larsson-2021