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michael-ford

michael-ford

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michael-ford's starred repositories

airrflow

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

Language:NextflowLicense:MITStargazers:47Issues:0Issues:0

bakir

Biologically-informed Killer cell immunoglobulin-like receptor (KIR) gene annotation tool šŸ§¬

Language:PythonStargazers:1Issues:0Issues:0

sciCSR

Single-Cell Inference of Class Switch Recombination

Language:RLicense:GPL-3.0Stargazers:15Issues:0Issues:0

data-science-development-project-template

A logical, reasonably standardized, but flexible project structure for doing and sharing data science research work while developing a software tool.

Language:Jupyter NotebookLicense:MITStargazers:4Issues:0Issues:0

vcf2prot

Accelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical processing units (GPUs).

Language:RustLicense:MITStargazers:13Issues:0Issues:0

MountainProject

A scraper and reddit bot for the website MountainProject.com

Language:C#Stargazers:56Issues:0Issues:0

surfpy

Surfing math library for Python

Language:PythonLicense:MITStargazers:100Issues:0Issues:0

data-engineering-zoomcamp

Free Data Engineering course!

Language:Jupyter NotebookStargazers:24254Issues:0Issues:0

multipy

Multiple hypothesis testing in Python

Language:PythonLicense:BSD-3-ClauseStargazers:101Issues:0Issues:0

gAIRRsuite

Profiling Germline Adaptive Immune Receptor Repertoire with gAIRR Suite

Language:PythonLicense:MITStargazers:6Issues:0Issues:0

POUTINE

POUTINE: a next-generation homoplasy counting method for genome-wide association studies.

Language:JavaLicense:GPL-3.0Stargazers:9Issues:0Issues:0

ImmunoTyper-SR

Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data

Language:PythonLicense:NOASSERTIONStargazers:8Issues:0Issues:0

imrep

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.

Language:CStargazers:11Issues:0Issues:0

Riskfolio-Lib

Portfolio Optimization and Quantitative Strategic Asset Allocation in Python

Language:C++License:BSD-3-ClauseStargazers:2926Issues:0Issues:0

WFA-paper

Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment

Language:CLicense:NOASSERTIONStargazers:199Issues:0Issues:0

git-subrepo

Language:ShellLicense:MITStargazers:3201Issues:0Issues:0

Winnowmap

Long read / genome alignment software

Language:CLicense:NOASSERTIONStargazers:242Issues:0Issues:0

ImmunoTyper

IGHV genotyper tool using PacBio WGS Long Reads

Language:PythonStargazers:3Issues:0Issues:0