mgperry

Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.

Language:C++GPL-3.02000

polars

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

Language:RustNOASSERTION2863400

clerk

⚡️ Moldable Live Programming for Clojure

Language:ClojureISC176000

pybedtools

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")

Language:PythonNOASSERTION29700

dataclass-csv

Map CSV to Data Classes

Language:PythonNOASSERTION19400

footprint-tools

A toolset to analyze genomic footprinting data

Language:CGPL-3.01900

MOODS

MOODS: Motif Occurrence Detection Suite

Language:C++NOASSERTION9600

FONtools

JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage

Language:PythonMPL-2.01300

encodeproject

Python package wrapping some of the encode project APIs.

Language:PythonMIT200

train-aquafaang-bioinf

AQUA-FAANG Bioinformatics training course on regulatory elements

Language:HTMLApache-2.0100

gosling.js

Grammar of Scalable Linked Interactive Nucleotide Graphics

Language:TypeScriptMIT15600

tinydb

TinyDB is a lightweight document oriented database optimized for your happiness :)

Language:PythonMIT668500

tech.ml.dataset

A Clojure high performance data processing system

Language:ClojureEPL-1.065500

intension

Query nested maps/vectors with Datalog

Language:Clojure16000

Data Restructuring DSL in Clojure. You write declarative specifications for complicated data transformations and faconne generates the functions automatically. Published on Clojars and used in production code for years.

Language:ClojureMIT11800