mgperry

heatmaps

Plotting package originally based around the seqPattern Bioconductor package. Still very much in development.

plyrs

yet another dplyr-in-python: based around polars with BRAND NEW dot-free chaining syntax

rswitch.py

A small python script that gives the functionality of Rswitch from the command line

encode-api

InteractionSet

Bioconductor class for genomic interaction data

kak

never going back to vim

polars

Fast multi-threaded, hybrid-out-of-core DataFrame library in Rust | Python | Node.js

pybedtools

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")

regulation-pwm-tools

Tools for loading PWMs and running MOODs for our internal pipelines and method development

trackhub

create, manage, and upload track hubs for use in the UCSC genome browser

train-aquafaang-bioinf

AQUA-FAANG Bioinformatics training course on regulatory elements

treeCl

Clustering phylogenetic trees with python