meren

BLAST-filtering-pipeline

A very simple BLAST filtering pipeline

anvio

An analysis and visualization platform for 'omics data

hmp-oral-microbiota

Some data files and scripts for our oligotyping analysis of human oral microbiota.

anchor-trimmer

Anchor trimming program for bacterial amplicon sequences.

anvio-methods-paper-analyses

Some of the batch and R scripts to generate figures and stuff.

BEAR

A Better Sequencing Simulator for Metagenomics

GEXF-generator

Generate XML formatted GEXF files for Gephi

GhostKoalaParser

Parser for Ghost Koala

kablammo

BLAST results visualization tool

MED-Paper-Figure-6

A bunch of embarrassing ad-hoc python scripts to generate the alluvial diagram

meren-lab-tools

meren.github.io

http://meren.org

mOTUlizer

Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin

PhageBoost

Rapid discovery of novel prophages using biological feature engineering and machine learning

aiopg

aiopg is a library for accessing a PostgreSQL database from the asyncio

bin-sequences-by-first-50

Takes FASTA as an argument, create some useless stats.

BinSanity

Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation

bioconda-recipes

Conda recipes for the bioconda channel.

EBAME18

Long read metagenomics practical at EBAME18

ebov

Ebola virus surveillance

gff_parser

Parser to add external gene calls and functional annotation from Prokka to Anvi'o.

ggplot2

An implementation of the Grammar of Graphics in R

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

pommunity

A tool to produce sequences with Roche/454 errors to create realistic pseudo-microbial communities.

primer-shift-experiment

radpress

A simple blog engine written in Django.

rails

Ruby on Rails

rp-award.github.io

Research Parasite Award Website

smhasher

Automatically exported from code.google.com/p/smhasher