Meren Lab's repositories
illumina-utils
A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
oligotyping
Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
reads-for-assembly
Simulate metagenomic short reads from one or more populations.
world-map-r
A simple script to display stuff on a world map with R and ggplot
MerenLab-workflows
A repository with scripts to run pipeline that are commonly used in the Meren Lab
merenlab.org
Web content for Meren Lab
anviserver
The code behind anvi'server
google-scholar-parser
A set of Python utilities to parse Google Scholar data
SAAV-structural-mapping
Map single amino acid variants onto protein structures. Modus operandi: explore relationships between genetic variation and structural biology.
barhal-bot
Our little Slack Bot that helps us keep an eye on our server
clusterize
The most basic SLURM wrapper
CONCOCT
Clustering cONtigs with COverage and ComposiTion
gff_parser
Parser to add external gene calls and functional annotation from Prokka to Anvi'o.