Menche Lab's repositories
BioProfiling.jl
A flexible Julia toolkit for high-dimensional cellular profiles
cartoGRAPHs_app
A webbased visualization framework for networks.
Analytics_Module
Flask-based server handling data requests from the UI Module (VRNetzer)
Knaus_et_al_2022
This repository contains information and code about the analysis of metabolomics, lipidomics and proteomics for Knaus et al. Large neutral amino acid levels tune perinatal neuronal excitability and survival
radipop_scripts
Scripts to train and validate random forest model for HVPG prediction
STRING-VRNetzer
Access protein-protein association networks from STRING DB in VRNetzer
catwork
Enables participants of an event to scan each others QR codes and creates a social network in real time
CytoDiVR
Cytoscape Application to provide feature for the use of the DataDiVR
ExampleExtension
Example Repository of an VRNetzer backend extension
Exposome
This repository will contain the analyses for the human exposure network paper
hfd-mutagenesis
Code for Analysis and Figures of Manuscript "Mutational Landscape of Intestinal Stem Cells After Long-term in Vivo Exposure to High Fat Diet"
mutsigints
Interactions of mutational signatures and cancer states
mutsigintsKit
Functions for the mutsigints project.
Neuwirth_Malzl_et_al_2024
Code repository for all analyses shown in Neuwirth and Malzl et al. 2024
novarinocollab
A repository containing the code for the collaboration with the Novarino lab
PPI_Spread_for_MutSig
Spread mutations capture disturbed repair modules in the PPI
ProteinStructureFetch
Repository for the ProteinStructureFetch extensions. An extension for the VRNetzer ecosystem.
SA_bone_marrow
scRNA-seq analysis of the Radhouani et al.