memoll

Comparison_of_DA_microbiome_methods

MetBrewer

Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

Fordem

For Democracy برای مردم‌گردانی

KersSaccenti-Power

os-digital-democracy-iran

Open Science Digital Democracy Research for Iran

msaadeghii.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

chrome-extension

The simplest way to add line numbers to Google Docs

BIRDMAn

Bayesian Inferential Regression for Differential Microbiome Analysis

gemelli

Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

thankYouJADI

a Tribute page for dear @jadijadi

muscle

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

Core

Woman, life, freedom

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

metaphlan-plot-by-taxa

Python script to convert the metagenomic profile txt file to taxa level plots in python's bokeh and R's phyloseq

microeco

An R package for data analysis in microbial community ecology

multiomic-cooccurrences

gemelli

tensor decomposition for spatiotemporal omics data

metage2metabo

From annotated genomes to metabolic screening in large scale microbiotas

omnibus-and-maaslin2-rscripts-and-hmp2-data

Omnibus and Maaslin2 Rscripts and hmp2-data

MDSINE2

humann

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

kneaddata

Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

metannotate

Snakemake pipeline for running HUMAnN3.6

Template-LaTeX-Elsevier-CAS-DC

A template repository for quickly setting up papers to be submitted to Elsevier Journals

wesanderson

A Wes Anderson color palette for R

American-Gut

American Gut open-access data and IPython notebooks

Workshop2019

Merge of workflow and dada2 new tutorial material for 2019 workshops: ASM, STAMPS

GraphsTutorial

Tutorial on Graphs and Networks

network_scripts